NovaGen / Services
RNA-seq and single-cell RNA-seq analysis
Bulk and single-cell RNA-seq data analysed end to end, from raw reads or count tables to validated results, publication-ready figures and code you can rerun.
Who it's for
- Research groups with sequencing data back from the core facility and no in-house analyst
- Labs that need differential expression or cell-type results for a manuscript or grant
- Teams that want an independent, reproducible re-analysis of existing data
What you receive
Bulk RNA-seq, from raw reads to results
You receive: Read quality reports, quantification, normalisation, differential expression with proper multiple-testing correction, pathway analysis, and volcano plots, heatmaps and PCA figures.
Single-cell RNA-seq analysis
You receive: Quality control and doublet removal, batch integration, clustering, cell-type annotation, marker genes, differential expression between conditions and cell-proportion comparisons, with UMAPs, dot plots and heatmaps.
Data we accept
FASTQ files, count matrices, 10x Genomics outputs (filtered matrices or .h5), and sample metadata in Excel or CSV. We work with anonymised data only, and a confidentiality agreement can be signed before you share anything.
How a project runs
- You share your study and the data you have.
- You receive an analysis plan with the scope, timeline and a fixed price, agreed in writing before any work starts.
- Quality control comes first, and any data problems are reported as they are found.
- You receive figures, tables, documented code and a technical summary of every step, organised so you can rerun everything.
Analysis, figures and tables only; manuscript writing is not included.
Questions
- Can you start from FASTQ files?
- Yes. We run quality control and quantification first, so problems in the data are found before they reach your results. If you already have a count table, we start from there.
- Do you include pathway analysis?
- Yes. Gene ontology, KEGG, Reactome and GSEA results are included where they answer your study question, as tables and figures.
- Will I get the code?
- Yes. Every project includes a documented notebook or script and a technical summary of each step and parameter, so you or a reviewer can rerun everything.
Tell us about your project
Share your study and the data you have. You'll receive an analysis plan and a fixed quote before any work starts.
Request a quote